Research Papers

• Kushwaha B, Kumar R, Agarwal S, Pandey M, Nagpure NS, Singh M, Srivastava S, Joshi CG, Sahoo L, Jayasankar P, Meher PK, Shah TM, Patel AB, Patel N, Koringa P, Sofia, Das P, Patnaik S, Bit A, Agarwal S, Iquebal MA, Kumar D, Jena JK (2015). Assembly and variation analyses of Clarias batrachus mitogenome retrieved from WGS data and its phylogenetic relationship with other catfishes. Meta Gene, 5: 105-114.
• Nagpure NS, Srivastava R, Kumar R, Kushwaha B, Srivastava SK Kumar P, Dabas A 2015. Assessment of genotoxic and mutagenic potential of hexavalent chromium in the freshwater fish Labeo rohita (Hamilton, 1882). Drug and Chemical Toxicology, 38(1): 9-15.
• Nagpure NS, Rashid I, Pathak AK, Singh M, Pati M, Singh SP, Sarkar UK (2015). FMiR: A Curated Resource of Mitochondrial DNA Information for Fish. PLoS ONE 10(8): e0136711. https://doi.org/10.1371/journal.pone.013671.
• Das SP, Bit A, Patnaik S, Sahoo L, Meher PK, Jayasankar P, Saha TM, Patel AB, Patel N, Koringa P, Joshi CG, Agarwal S, Pandey M, Srivastava S, Kushwaha B, Kumar R, Nagpure NS, Iquebal MA, Jaiswal S, Kumar D, Jena JK, Das P.(2016) Low-depth shotgun sequencing resolves complete mitochondrial genome sequence of Labeo rohita. Mitochondrial DNA: The Journal of DNA Mapping, Sequencing, and Analysis, 27(5): 3517-8.
• Agarwal S, Nagpure NS, Srivastava P, Kushwaha B, Kumar R, Pandey M, Srivastava S (2016). In silico genome wide mining of conserved and novel miRNAs in the brain and pineal gland of Danio rerio using small RNA sequencing data. Genomics Data, 7: 46–53.
• Nagpure NS, Pathak AK, Pati R, Rashid I, Sharma J, Singh SP, Singh M, Sarkar UK, Kushwaha B, Kumar R (2016). Fish Karyome (Version 2.1): A Chromosome Database of Fish and other Aquatic Organisms. Database (Oxford), article ID baw012; doi:10.1093/database/baw012.
• Srivastava S, Kushwaha B, Prakash J, Kumar R, Nagpure NS, Agarwal S, Pandey M, Das P, Joshi CG, Jena JK (2016). Development and characterization of genic SSR markers from low depth genome sequence of Clarias batrachus (magur). Journal of Genetics, 95(3): 603-9.
• Agarwal S, Nagpure NS, Srivastava P, Kushwaha B, Kumar R, Pandey M, Srivastava S (2017). In silico mining of conserved miRNAs of Indian catfish Clarias batrachus (Linnaeus, 1758) from the contigs, ESTs and BAC end sequences. Applied Biochemistry and Biotechnology,182 (3): 956-966.
• Srivastava S, Kushwaha B, Prakash J, Kumar R, Nagpure NS, Agarwal S, Pandey M, Das P, Joshi CG, Jena JK (2017). Identification and characterization of SSRs in Clarias batrachus and their application in population study. Fisheries Science, 83 (2): 265–272
• Nagpure NS, Srivastava R, Kumar R, Dabas A, Kushwaha B, Kumar P (2017). Mutagenic, genotoxic and bio-accumulative potentials of tannery effluents in freshwater fishes of River Ganga. Human and Ecological Risk Assessment 23 (1): 98–111.
• Rashid I, Nagpure NS, Srivastava P, Kumar R, Pathak A, Singh M, and Kushwaha B (2017). HRGFish: A database of hypoxia responsive genes in fishes. Scientific Reports-Nature, 7:42346, DOI: 10.1038/srep42346.
• Pandey M, Kumar R, Srivastava P, Agarwal S, Srivastava S, Nagpure NS, Jena JK (2018). WGSSAT: A high-throughput computational pipeline for mining and annotation of SSR markers from whole genome. Journal of Heredity, 109 (3): 339-343
• Pandey AK, Nagpure NS, Trivedi SP (2018). Geneotoxcity assessment of pesticide profenofos in freshwater fish Channa punctatus (Bloch) using comet assay and random amplified polymorphic DNA (RAPD). Chemosphere 211: 316-323.
• Pathak AK, Rashid I, Nagpure NS, Kumar R, Pati R, Singh M, Murli S, Kushwaha B, Kumar D, Rai A (2019). FisOmics: A portal of fish genomic resources. Genomics 111: 1923–1928.
• Kumar P, Wisdom KS, Bhat IA, Gireesh-Babu P, Nayak SK, Reang D, Nagpure NS, Sharma R (2019). Molecular characterization of gonadotropin inhibitory hormone (GnIH) gene and effect of intramuscular injection of GnIH peptide on the reproductive axis in Catla catla. Animal Biotechnology, https:// doi.org/ 10.1080/ 10495398. 2019. 1597730.
• Kumar P, Wisdom KS, Bhat IA, Gireesh-Babu P, Nayak SK, Reang D, Nagpure NS, Sharma R (2019). Molecular characterization of gonadotropin inhibitory hormone (GnIH) gene and effect of intramuscular injection of GnIH peptide on the reproductive axis in Catla catla. Animal Biotechnology, https:// doi.org/ 10.1080/ 10495398. 2019. 1597730.
• Kalita N, Pavan-Kumar A, Phukan B, Chaudhari A, Nagpure NS (2020). Genetic diversity of Vulnerable Assamese Kingfish, Cyprinion semiplotum (McClelland, 1839) inferred from mitochondrial DNA marker. National Academy of Sciences Letters, https://doi.org/10.1007/s40009-020-00905-3.
• Kumar P, Wisdom KS, Kumar G, Gireesh-Babu P, Nayak SK, Nagpure NS, Sharma R. (2020). Ontogenetic and tissue-specific expression of gonadotropin-inhibitory hormone (GnIH) and its receptors in Catla catla. Molecular Biology and Reproduction, doi: 10.1007/s11033-020-05388-5.
• Meena LL, Goswami M, Chaudhari A, Nagpure NS, Gireesh-Babu P, Dubey A, Das DK. (2020). Development and characterization of a new DRCF cell line from Indian wild strain zebrafish Danio rerio (Hamilton 1822). Fish Physiology and Biochemistry, doi: 10.1007/s10695-020-00792-x.
• Das P, Sahoo L, Das SP, Bit A, Joshi CG, Kushwaha B, Kumar D, Shah TM, Hinsu AT, Patel N, Patnaik S, Agarwal S, Pandey M, Srivastava S, Meher PK, Jayasankar P, Koringa PG, Nagpure NS, Kumar R, Singh M, Iquebal MA, Jaiswal S, Kumar N, Raza M, Mahapatra KD, and Jena JK (2020). De novo Assembly and Genome-Wide SNP Discovery in Rohu Carp, Labeo rohita. Frontiers in Genetics. 11: 386, doi: 10.3389/ fgene.2020.00386.

Other Publications

• अजय कुमार पाठक, अंशुल तिवारी, एन एस नागपुरे, इलियास राशिद, रामेश्वर पति (२०१५). मछलियोमें में अजैविक तनाव, खेती (भा०कृ०अनुप० पत्रिका) ६७(८): १७-१९.
• Pathak Ajey Kumar and N.S. Nagpure (2019). Research avenues for fish bioinformatics: Signs and perception in India. Fishing Chimes 39(4): 24-26

Ongoing Projects

Others

• Over 600 nucleotide Sequences submitted to NCBI GenBank.
• Developed four online databases viz. Fish Barcode Information System (FBIS), Fish Karyome, FishMicrosat and Fish Mitogenome Resource (FMiR).